Home
Home Page for the UCSD SNP Discovery programs
PPG
Program
PPG program aims, organization,
projects, personnel, flow
chart
Program
Data
Public Data and UCSD Account Data
Information on mouse genes with cognate human genes of potential interest to this program.
B. Primary Mouse Chromosome Resource Centers
Internet Links to Information on Mouse Chromosomes, their genes, and relationships of genes and their products to human disease, with emphasis on primary Resource Centers for such Information.
Mouse Chromosomes
Human
Chromosomes
Human Genome info
Candidate
Loci
Mouse
Chromosomes
Mouse Genome info
Cand
Loci Homologues
SNPs and Haplotypes
Single Nucleotide Polymorphism
and Haplotype info
Usage
Usage and help for Program software
Recent
Changes
Changes in Web Site Data
DNASYSTEM
Web pages with Links to other Bioinformatic Sites
NCBI - National Center for Biotechnology Information,
USA
- The NCBI Handbook
- Mouse Genome Resources
- Mouse Genes
- LocusLink - query interface
to genetic loci information
- Entrez Gene - unified query environment for genes ... will replace LocusLink
- HomoloGene - automated detection of homologs among genes of sequenced genomes
- Homology Map - Blocks of conserved synteny between mouse and human ... out of date but useful
- Entrez Gene - unified query environment for genes ... will replace LocusLink
- Sequences
- Mouse Genome Sequencing
- current mouse sequence information ... may not be uptodate
- RefSeq - comprehensive, non-redundant set of genomic, transcript, and protein sequences
- UniGene - non-redundant set of gene-oriented clusters of GenBank sequences
- dbEST - Database of Expressed Sequence Tags
- UniSTS - Database of Sequence Tagged Sites
- Full-Length cDNA Projects - high-throughput construction of full-length cDNA clones
- CloneFinder - identify clones containing an object or that are within a given chromosome region
- RefSeq - comprehensive, non-redundant set of genomic, transcript, and protein sequences
- Maps
- MapViewer - graphic
display ala ACeDB of genomic info via chromosomal posn
- Entrez/Genomes - Prominant Organisms with Sequence Information
- Davis Human/Mouse Homology Map - Homology Relationships
- Entrez/Genomes - Prominant Organisms with Sequence Information
- Genetic Variation
- dbSNP - Database of Single Nucleotide Polymorphisms
- Gene Expression
- Mouse Genome Resources
UCSC Genome Bioinformatics - Univ Cal Santa Cruz, CA, USA
- Mouse Genome Browser -
zooms and scrolls over mouse Chromosomes
- Gene Sorter - expression, homology, and other info on groups of mouse genes
- Blat - maps your sequence to the mouse Genome
- Table Browser - access to the underlying mouse Database (not for the timid ...)
- Gene Sorter - expression, homology, and other info on groups of mouse genes
Ensembl - EMBL-EBI and Sanger Institute project for genome
data, including mouse data
Note: use URL info for Ensembl links below to determine how to search for a given locus or object at Ensembl
- Site Map - Ensembl Site
Map for mouse information
- Mouse Genome Server - annotation of the mouse genome
- Ensembl Chromosomes - Chromosome Info in ChromoView, for mouse chromosome 12
- Ensembl Synteny Map - Chrom Synteny in SyntenyView, for mouse chromosome 12
- Ensembl Contig Map - Chromosome Region in ContigView, for Chga (contig CAAA01057780.1.1.46841)
- Ensembl Cytological Map - Chrom Region in CytoView, for Chga (chrom 12, band F1)
- Ensembl Gene Report - Gene Info in GeneView, for Chga (gene ENSMUSG00000021194)
- Ensembl Exon Report - Exon Info in ExonView, for Chga (transcript ID ENSMUST00000021610)
- Ensembl Transcript Report - Transcript Info in TransView, for Chga (transcript ID ENSMUST00000021610)
- Ensembl Protein Report - Peptide Info in ProteinView, for mouse CgA (protein ENSMUSG00000021194)
- Ensembl Protein Family - Family Info in FamilyView, for mouse CgA (family ENSF00000006358)
- Interpro Domain - Protein Domain Info in DomainView, for ATP binding site motif (interpro IPR001687)
- Ensembl SNP Report - NCBI dbSNP Info in SNPView, for CHGA (SNP rs13461500, A/G, Ala4Thr)
- Ensembl Gene SNP Report - Gene SNP Report in GeneSNPView, for Chga (gene ENSMUSG00000021194)
- Mouse Genome Server - annotation of the mouse genome
RHdb - Radiation
Hybrid DataBase - data for construction
of Radiation Hybrid Maps (human, mouse, rat)
C. Selected Additional Mouse Genome Sites
- MGI
- Mouse Genome Informatics - Jackson
Laboratory home site for laboratory mouse
- IMSR - International Mouse Strain Resource - Jackson Lab database of mouse strains and stocks
- Tennessee Mouse Genome Consortium (TMGC) - mouse consortium of Oak Ridge plus other Tennessee centers
- The Mouse Genome Project - mouse genome efforts at Baylor College of Medicine
- Sanger Institute - Mouse Genome - mouse genome efforts at the Sanger Institute, UK
- Mouse Mapping - BC Cancer Agency, Canada, mouse mapping efforts
- Whole Mouse Catalog - Genome - links related to mouse genomics
- MGI - Mouse-Related Links and Resources - Jackson Laboratory list of useful mouse links and resources
- Mouse SNP Data - Mouse SNPs from the Whitehead Lab, MIT
- IMSR - International Mouse Strain Resource - Jackson Lab database of mouse strains and stocks
Latest modification: November,
2004
If you have comments or queries, send email to Doug Smith