Home
Home Page for the UCSD SNP Discovery programs
PPG
Program
PPG program aims, organization,
projects, personnel, flow
chart
Program
Data
Public Data and UCSD Account Data
Information on human genes of potential interest to this program.
B. Primary Human Chromosome Resource Centers
Internet Links to Information on Human Chromosomes, their genes, and relationships of genes and their products to human disease, with emphasis on primary Resource Centers for such Information.
Human Chromosomes
Human
Chromosomes
Human Genome info
Candidate
Loci
Mouse
Chromosomes
Mouse Genome info
Cand
Loci Homologues
SNPs
and Haplotypes
Single Nucleotide Polymorphism and Haplotype info
Usage
Usage and help for Program software
Recent
Changes
Changes in Web Site Data
DNASYSTEM
Web pages with Links to other Bioinformatic Sites
NCBI - National Center for Biotechnology Information,
USA
- The NCBI Handbook
- Human Genome Resources
- SKY / M-FISH & CGH - molecular cytogenetic databases
- Human Genes
- Human Genome Resources
-
- OMIM - Online Mendelian Inheritance in Man
- LocusLink - query interface
to genetic loci information
- Entrez Gene - unified query environment for genes ... will replace LocusLink
- HomoloGene - automated detection of homologs among genes of sequenced genomes
- Entrez Gene - unified query environment for genes ... will replace LocusLink
- Sequences
- RefSeq - comprehensive, non-redundant set of genomic, transcript,
and protein sequences
- UniGene - non-redundant set of gene-oriented clusters of GenBank sequences
- dbEST - Database of Expressed Sequence Tags
- UniSTS - Database of Sequence Tagged Sites
- UniGene - non-redundant set of gene-oriented clusters of GenBank sequences
- Maps
- MapViewer - graphic display ala ACeDB of genomic info via chromosomal
posn
- GeneMap99 - Gene Map of the Human Genome
- H. sapiens Genome View - Map Viewer for each human chromosome
- Entrez/Genomes - Prominant Organisms with Sequence Information
- Davis Human/Mouse Homology Map - Homology Relationships
- GeneMap99 - Gene Map of the Human Genome
- Genetic Variation
- dbSNP - Database of Single Nucleotide
Polymorphisms
- Mutations DBs - OMIM Locus-specific mutation database links
- Gene Expression
- SAGEmap
- Serial Analysis of Gene Expression; SAGE tags related to UniGene
Clusters
- GEO - Gene Expression Omnibus - gene expression/abundance data repository
UCSC Genome Bioinformatics - Univ Cal Santa Cruz, CA, USA
- Genome Browser - zooms
and scrolls over Chromosomes
- Gene Sorter - expression, homology, and other info on groups of genes
- Blat - maps your sequence to the Genome
- Table Browser - access to the underlying Database (not for the timid ...)
- Gene Sorter - expression, homology, and other info on groups of genes
Ensembl - EMBL-EBI and Sanger Institute project for human
genome data
Note: use URL info for Ensembl links below to determine how to search for a given locus or object at Ensembl
- Site
Map - Ensembl Site Map for human information
- Human Genome Browser - annotation of the human genome
- Ensembl Chromosomes - Chromosome Info in ChromoView, for chromosome 14
- Ensembl Synteny Map - Chrom Synteny in SyntenyView, for chromosome 14
- Ensembl Contig Map - Chromosome Region in ContigView, for CHGA (contig AL117192.5.1.210869)
- Ensembl Cytological Map - Chrom Region in CytoView, for CHGA (chrom 14, band q32.12)
- Ensembl Gene Report - Gene Info in GeneView, for CHGA (gene ENSG00000100604)
- Vega Gene Report - Gene Info in GeneView, for CHGA (Vega gene ID OTTHUMG00000029709)
- Ensembl Exon Report - Exon Info in ExonView, for CHGA (transcript ID ENST00000216492)
- Ensembl Transcript Report - Transcript Info in TransView, for CHGA (transcript ID ENST00000216492)
- Ensembl Protein Report - Peptide Info in ProteinView, for CgA (protein ENSP00000216492)
- Ensembl Protein Family - Family Info in FamilyView, for CgA (family ENSF00000006358)
- Interpro Domain - Protein Domain Info in DomainView, for ATP binding site motif (interpro IPR001687)
- Ensembl SNP Report - NCBI dbSNP Info in SNPView, for CHGA (SNP rs729940, C/T, Arg381Trp)
- Ensembl Gene SNP Report - Gene SNP Report in GeneSNPView, for CHGA (gene ENSG00000100604)
- CEPH Haplotype Report - Ensembl Haplotype Info in HaploView, for RPL3 region (haplotype ID CHR22_A_61)
- Ensembl Disease Report - Disease Info in DiseaseView, for "Hypertension, essential" (loci AGTR1, AGTR1A, AT2R1, GNB3)
- Human Genome Browser - annotation of the human genome
RHdb - Radiation
Hybrid DataBase - data for construction
of Radiation Hybrid Maps (human, mouse, rat)
C. Additional Human Genome Sites
- The
Genome Database
- HUGO database for Human Genome Annotation
- Human Genome Project - Oak Ridge DOE site about the HGP
- Human Genome Research - DOE Human Genome Program research projects
- National Human Genome Research Institute - NHGRI, NIH, site for Human Genome Project
- The Human Genome Organization - HUGO website in UK
- Nature Genome Gateway - Genome info, including Human Genome, from Nature
- Stanford Human Genome Center - Info on Stanford contributions and activities
- Baylor Human Genome Sequencing Center - Info on Baylor projects, including informatics tools at BCM Search Launcher
- LLNL Human Genome Center - Livermore HGP activities
- LBNL Human Genome Center - Lawrence Berkeley National Lab, plus Livermore and Los Alamos contributions and activities
- Sanger Institute Human Genome Project - HGP activities at Sanger Institute, UK
- Human Genome Center - Tokyo - HGP in Japan, databases, software tools, etc
- Crown Human Genome Center - HGP efforts at Weizmann Institute, Israel
- The Human Genome - Wellcome Trust - Wellcome Trust, UK, site
- Human Mutation Databases/Resources - Amos Bairoch's (ExPASy) links
- Human Genome Project - Oak Ridge DOE site about the HGP
Latest modification: November, 2004
If you have comments or queries, send email to Doug Smith